Index

Symbols

--all matflow-config-get command line option --config-dir matflow command line option --config-invocation-key matflow command line option --exclude-os matflow-submission-shell-info command line option --file matflow-config-get command line option matflow-helper-pid command line option --format matflow-go command line option matflow-make command line option --help matflow command line option --hpcflow-version matflow command line option --infile1 matflow-demo-software-doSomething command line option --infile2 matflow-demo-software-doSomething command line option --invocation matflow-config command line option --js-parallelism matflow-go command line option matflow-workflow-WORKFLOW_PATH-submit command line option --json matflow-config-set command line option --name matflow-go command line option matflow-make command line option --os-info matflow-submission command line option --out matflow-demo-software-doSomething command line option --overwrite matflow-go command line option matflow-make command line option --path matflow-go command line option matflow-make command line option

--run-time-info matflow command line option --store matflow-go command line option matflow-make command line option --string matflow-go command line option matflow-make command line option --timeout matflow-helper-restart command line option matflow-helper-run command line option matflow-helper-start command line option --timeout-check-interval matflow-helper-restart command line option matflow-helper-run command line option matflow-helper-start command line option --ts-fmt matflow-go command line option matflow-make command line option --ts-name-fmt matflow-go command line option matflow-make command line option --value matflow-demo-software-doSomething command line option --version matflow command line option --watch-interval matflow-helper-restart command line option matflow-helper-run command line option matflow-helper-start command line option --with-config matflow command line option -f matflow-helper-pid command line option -i1 matflow-demo-software-doSomething command line option -i2 matflow-demo-software-doSomething command line option -o matflow-demo-software-doSomething command line option -v matflow-demo-software-doSomething command line option

A

abort_EARs_file_name (matflow.Submission property) abort_EARs_file_path (matflow.Submission property) abortable (matflow.InputFileGenerator attribute) (matflow.OutputFileParser attribute) Action (class in matflow) action (matflow.ElementAction property) (matflow.ElementActionRun property) action_idx (matflow.ElementAction property) action_runs (matflow.Element property) (matflow.ElementIteration property) ActionEnvironment (class in matflow) ActionRule (class in matflow) actions (matflow.Element property) (matflow.ElementIteration property) ActionScope (class in matflow) ActionScopeType (class in matflow) add_elements() (matflow.WorkflowTask method) add_group() (matflow.Task method) add_iteration() (matflow.WorkflowLoop method) add_loop() (matflow.Workflow method) add_object() (matflow.CommandFilesList method) (matflow.EnvironmentsList method) (matflow.ExecutablesList method) (matflow.GroupList method) (matflow.ParametersList method) (matflow.ResourceList method) (matflow.TaskList method) (matflow.TaskSchemasList method) (matflow.TaskTemplateList method) (matflow.WorkflowLoopList method) (matflow.WorkflowTaskList method) add_objects() (matflow.CommandFilesList method) (matflow.EnvironmentsList method) (matflow.ExecutablesList method) (matflow.GroupList method) (matflow.ParametersList method) (matflow.TaskList method) (matflow.TaskSchemasList method) (matflow.TaskTemplateList method) (matflow.WorkflowLoopList method) (matflow.WorkflowTaskList method) add_submission() (matflow.Workflow method) add_task() (matflow.Workflow method) add_task_after() (matflow.Workflow method) add_task_before() (matflow.Workflow method) additive_factor (matflow.ValuePerturbation attribute) address (matflow.SubParameter attribute) all_EAR_IDs (matflow.Submission property) all_schema_actions() (matflow.Task method) all_schema_input_normalised_paths (matflow.Task property) all_schema_input_types (matflow.Task property) all_schema_inputs (matflow.Task property) all_schema_output_types (matflow.Task property) all_schema_outputs (matflow.Task property) all_sequences_normalised_paths (matflow.Task property) all_sourced_normalised_paths (matflow.Task property)

all_used_sequences_normalised_paths (matflow.Task property) ALLOWED_PARAMETERS (matflow.ResourceSpec attribute) ANY (matflow.ActionScopeType attribute) (matflow.TaskSourceType attribute) any() (matflow.ActionScope class method) app (in module matflow) (matflow.Action attribute) (matflow.ActionEnvironment attribute) (matflow.ActionRule attribute) (matflow.ActionScope attribute) (matflow.Command attribute) (matflow.Element attribute) (matflow.ElementAction attribute) (matflow.ElementActionRun attribute) (matflow.ElementIteration attribute) (matflow.ElementParameter attribute) (matflow.ElementPropagation attribute) (matflow.ElementResources attribute) (matflow.ElementSet attribute) (matflow.Environment attribute) (matflow.Executable attribute) (matflow.ExecutableInstance attribute) (matflow.FileNameExt attribute) (matflow.FileNameSpec attribute) (matflow.FileNameStem attribute) (matflow.FileSpec attribute) (matflow.InputFile attribute) (matflow.InputFileGenerator attribute) (matflow.InputFileGeneratorSource attribute) (matflow.InputSource attribute) (matflow.InputValue attribute) (matflow.Jobscript attribute) (matflow.Loop attribute) (matflow.NumCores attribute) (matflow.OutputFileParser attribute) (matflow.OutputFileParserSource attribute) (matflow.Parameter attribute) (matflow.ParameterPath attribute) (matflow.ResourceSpec attribute) (matflow.SchemaInput attribute) (matflow.SchemaOutput attribute) (matflow.SchemaParameter attribute) (matflow.Submission attribute) (matflow.Task attribute) (matflow.TaskObjective attribute) (matflow.TaskSchema attribute) (matflow.ValuePerturbation attribute) (matflow.ValueSequence attribute) (matflow.Workflow attribute) (matflow.WorkflowLoop attribute) (matflow.WorkflowLoopList attribute) (matflow.WorkflowTask attribute) (matflow.WorkflowTaskList attribute) (matflow.WorkflowTemplate attribute) arguments (matflow.Command attribute) artifacts_path (matflow.Workflow property)

B

batch_update() (matflow.Workflow method)

C

check_exists (matflow.ActionRule attribute) check_missing (matflow.ActionRule attribute) check_parameters_exist() (matflow.Workflow method) Command (class in matflow) command (matflow.Command attribute) (matflow.ExecutableInstance attribute) CommandFilesList (class in matflow) compose_commands() (matflow.ElementActionRun method) compose_jobscript() (matflow.Jobscript method)

compose_source() (matflow.ElementActionRun method) (matflow.InputFileGenerator method) (matflow.OutputFileParser method) condition (matflow.ElementFilter attribute) contents (matflow.InputFile property) (matflow.InputFileGeneratorSource property) (matflow.OutputFileParserSource property) copy() (matflow.Workflow method) creation_info (matflow.Workflow property)

D

data (matflow.param_classes.orientations.Orientations attribute) data_idx (matflow.ElementActionRun property) (matflow.ElementIteration property) (matflow.ElementParameter attribute) data_idx_is_set (matflow.ElementParameter property) DEFAULT (matflow.InputSourceType attribute) default (matflow.Parameters attribute) default() (matflow.InputSource class method) default_value (matflow.SchemaInput attribute)

defined_input_types (matflow.ElementSet property) (matflow.Task property) delete() (matflow.Workflow method) dependencies (matflow.Jobscript property) dir_diff (matflow.ElementActionRun property) dir_name (matflow.Element property) (matflow.Task property) (matflow.WorkflowTask property) downstream_tasks (matflow.WorkflowTask property)

E

EAR_ID matflow-internal-workflow-PATH-get-ear-skipped command line option matflow-internal-workflow-PATH-save-parameter command line option matflow-internal-workflow-PATH-set-ear-end command line option matflow-internal-workflow-PATH-set-ear-skip command line option matflow-internal-workflow-PATH-set-ear-start command line option matflow-internal-workflow-PATH-write-commands command line option EAR_ID (matflow.Jobscript property) EAR_ID_file_name (matflow.Jobscript property) EAR_ID_file_path (matflow.Jobscript property) EAR_IDs (matflow.ElementIteration property) EAR_IDs_flat (matflow.ElementIteration property) EARs_initialised (matflow.ElementIteration property) elem_iter_IDs (matflow.ElementSet property) Element (class in matflow) element (matflow.ElementAction property) (matflow.ElementActionRun property) (matflow.ElementIteration property) (matflow.ElementParameter attribute) element_action (matflow.ElementActionRun property) element_IDs (matflow.WorkflowTask property) element_iteration (matflow.ElementAction property) (matflow.ElementActionRun property) element_iterations (matflow.ElementSet property) element_local_idx_range (matflow.ElementSet property) element_run_dir_file_name (matflow.Jobscript property) element_run_dir_file_path (matflow.Jobscript property) element_set (matflow.Element property) (matflow.ElementPropagation property) (matflow.ResourceList property) (matflow.ResourceSpec property) element_set_idx (matflow.Element property) element_sets (matflow.Task property) ElementAction (class in matflow) ElementActionRun (class in matflow) ElementFilter (class in matflow) ElementGroup (class in matflow) ElementInputFiles (class in matflow)

ElementInputs (class in matflow) ElementIteration (class in matflow) ElementOutputFiles (class in matflow) ElementOutputs (class in matflow) ElementParameter (class in matflow) ElementPropagation (class in matflow) ElementRepeats (class in matflow) ElementResources (class in matflow) Elements (class in matflow) elements (matflow.ElementSet property) (matflow.WorkflowTask property) elements() (matflow.Workflow method) ElementSet (class in matflow) end_time (matflow.ElementActionRun property) ensure_element_sets() (matflow.ElementSet class method) ensure_input_sources() (matflow.WorkflowTask method) Environment (class in matflow) environment (matflow.ActionEnvironment attribute) (matflow.Executable property) (matflow.ExecutablesList attribute) (matflow.InputFileGenerator attribute) (matflow.OutputFileParser attribute) EnvironmentsList (class in matflow) EULER (matflow.param_classes.orientations.OrientationFormat attribute) Executable (class in matflow) ExecutableInstance (class in matflow) ExecutablesList (class in matflow) execution_path (matflow.Workflow property) EXIT_CODE matflow-internal-workflow-PATH-set-ear-end command line option exit_code (matflow.ElementActionRun property) expand() (matflow.Action method) EXPLICIT (matflow.ParameterPropagationMode attribute) ext (matflow.FileNameSpec property) (matflow.FileSpec property) extension (matflow.InputFile property) (matflow.InputFileGeneratorSource property) (matflow.OutputFileParserSource property)

F

file_name (matflow.FileNameExt attribute) (matflow.FileNameStem attribute) FileNameExt (class in matflow) FileNameSpec (class in matflow) FileNameStem (class in matflow) FileSpec (class in matflow) filter_instances() (matflow.Executable method) from_file() (matflow.Workflow class method) (matflow.WorkflowTemplate class method) from_JSON_file() (matflow.Workflow class method) (matflow.WorkflowTemplate class method) from_json_like() (matflow.Action class method) (matflow.ActionEnvironment class method) (matflow.ActionRule class method) (matflow.ActionScope class method) (matflow.Command class method) (matflow.CommandFilesList class method) (matflow.ElementResources class method) (matflow.ElementSet class method) (matflow.Environment class method) (matflow.EnvironmentsList class method) (matflow.Executable class method) (matflow.ExecutableInstance class method) (matflow.ExecutablesList class method) (matflow.FileNameExt class method) (matflow.FileNameSpec class method) (matflow.FileNameStem class method) (matflow.FileSpec class method) (matflow.GroupList class method) (matflow.InputFile class method) (matflow.InputFileGenerator class method) (matflow.InputFileGeneratorSource class method) (matflow.InputSource class method) (matflow.InputValue class method) (matflow.Jobscript class method) (matflow.Loop class method) (matflow.NumCores class method) (matflow.OutputFileParser class method) (matflow.OutputFileParserSource class method)

from_JSON_like() (matflow.param_classes.orientations.Orientations class method) from_json_like() (matflow.Parameter class method) (matflow.ParameterPath class method) (matflow.ParametersList class method) (matflow.ResourceList class method) (matflow.ResourceSpec class method) (matflow.SchemaInput class method) (matflow.SchemaOutput class method) (matflow.SchemaParameter class method) (matflow.Submission class method) (matflow.Task class method) (matflow.TaskList class method) (matflow.TaskObjective class method) (matflow.TaskSchema class method) (matflow.TaskSchemasList class method) (matflow.TaskTemplateList class method) (matflow.ValuePerturbation class method) (matflow.ValueSequence class method) (matflow.WorkflowLoopList class method) (matflow.WorkflowTaskList class method) (matflow.WorkflowTemplate class method) from_JSON_string() (matflow.Workflow class method) (matflow.WorkflowTemplate class method) from_linear_space() (matflow.ValueSequence class method) from_random() (matflow.param_classes.orientations.Orientations class method) from_range() (matflow.ValueSequence class method) from_spec() (matflow.ExecutableInstance class method) (matflow.ValuePerturbation class method) from_string() (matflow.InputSource class method) from_template() (matflow.Workflow class method) from_template_data() (matflow.Workflow class method) from_YAML_file() (matflow.Workflow class method) (matflow.WorkflowTemplate class method) from_YAML_string() (matflow.Workflow class method) (matflow.WorkflowTemplate class method) fs_path (matflow.Workflow property)

G

generate_data_index() (matflow.Action method) generate_new_elements() (matflow.WorkflowTask method) get() (matflow.CommandFilesList method) (matflow.Element method) (matflow.ElementAction method) (matflow.ElementActionRun method) (matflow.ElementIteration method) (matflow.EnvironmentsList method) (matflow.ExecutablesList method) (matflow.GroupList method) (matflow.ParametersList method) (matflow.ResourceList method) (matflow.TaskList method) (matflow.TaskSchemasList method) (matflow.TaskTemplateList method) (matflow.WorkflowLoopList method) (matflow.WorkflowTask method) (matflow.WorkflowTaskList method) get_action_rule() (matflow.InputFileGenerator method) get_all() (matflow.CommandFilesList method) (matflow.EnvironmentsList method) (matflow.ExecutablesList method) (matflow.GroupList method) (matflow.ParametersList method) (matflow.ResourceList method) (matflow.TaskList method) (matflow.TaskSchemasList method) (matflow.TaskTemplateList method) (matflow.WorkflowLoopList method) (matflow.WorkflowTaskList method) get_all_EARs() (matflow.Workflow method) get_all_element_iterations() (matflow.Workflow method) (matflow.WorkflowTask method) get_all_elements() (matflow.Workflow method) get_all_parameter_data() (matflow.Workflow method) get_all_parameters() (matflow.Workflow method) get_all_required_schema_inputs() (matflow.Task method) get_available_task_input_sources() (matflow.Task method) get_by_key() (matflow.TaskSchema class method) get_child_loops() (matflow.WorkflowLoop method) get_command_input_file_labels() (matflow.Action method) get_command_input_types() (matflow.Action method) get_command_output_types() (matflow.Action method) get_commands_action_env() (matflow.Action method) get_commands_file_name() (matflow.Jobscript method) get_data_idx() (matflow.Element method) (matflow.ElementAction method) (matflow.ElementActionRun method) (matflow.ElementIteration method) get_defined_parameter_types() (matflow.ElementSet method) get_defined_sub_parameter_types() (matflow.ElementSet method) get_dependent_EARs() (matflow.Element method) (matflow.ElementActionRun method) (matflow.ElementIteration method) get_dependent_element_iterations() (matflow.Element method) (matflow.ElementIteration method) get_dependent_elements() (matflow.Element method) (matflow.ElementIteration method) (matflow.WorkflowTask method) get_dependent_elements_recursively() (matflow.Element method) get_dependent_tasks() (matflow.Element method) (matflow.ElementIteration method) (matflow.WorkflowTask method) get_dir_name() (matflow.WorkflowTask method) get_EAR_dependencies() (matflow.Element method) (matflow.ElementActionRun method) (matflow.ElementIteration method) get_EAR_ID_array() (matflow.Jobscript method) get_EAR_IDs_of_tasks() (matflow.Workflow method) get_EAR_skipped() (matflow.Workflow method) get_EARs_from_IDs() (matflow.Workflow method) get_EARs_of_tasks() (matflow.Workflow method) get_element_dependencies() (matflow.Element method) (matflow.ElementIteration method) (matflow.WorkflowTask method) get_element_IDs_from_EAR_IDs() (matflow.Workflow method)

get_element_iteration_dependencies() (matflow.Element method) (matflow.ElementIteration method) get_element_iteration_IDs_from_EAR_IDs() (matflow.Workflow method) get_element_iterations_from_IDs() (matflow.Workflow method) get_element_iterations_of_tasks() (matflow.Workflow method) get_elements_from_IDs() (matflow.Workflow method) get_environment() (matflow.ElementActionRun method) get_IFG_input_values() (matflow.ElementActionRun method) get_input_dependencies() (matflow.Element method) (matflow.ElementActionRun method) (matflow.ElementIteration method) get_input_file_generator_action_env() (matflow.Action method) get_input_file_labels() (matflow.Action method) get_input_statuses() (matflow.Task method) get_input_types() (matflow.Action method) get_input_values() (matflow.ElementActionRun method) get_iteration_task_pathway() (matflow.Workflow method) get_jobscript_hash() (matflow.ElementResources method) get_key() (matflow.TaskSchema method) get_locally_defined_inputs() (matflow.ElementSet method) get_non_sub_parameter_input_values() (matflow.Task method) get_OFP_inputs() (matflow.ElementActionRun method) get_OFP_output_files() (matflow.ElementActionRun method) get_OS_info() (in module matflow) get_output_file_labels() (matflow.Action method) get_output_file_parser_action_env() (matflow.Action method) get_output_types() (matflow.Action method) (matflow.Command method) get_param_provided_element_sets() (matflow.Task method) get_parameter() (matflow.Workflow method) get_parameter_data() (matflow.Workflow method) get_parameter_dependence() (matflow.Action method) (matflow.TaskSchema method) get_parameter_names() (matflow.ElementAction method) (matflow.ElementActionRun method) (matflow.ElementIteration method) get_parameter_set_statuses() (matflow.Workflow method) get_parameter_source() (matflow.Workflow method) get_parameter_sources() (matflow.Element method) (matflow.ElementAction method) (matflow.ElementActionRun method) (matflow.ElementIteration method) (matflow.Workflow method) get_parameters() (matflow.Workflow method) get_parent_loops() (matflow.WorkflowLoop method) get_possible_scopes() (matflow.Action method) get_precise_scope() (matflow.Action method) get_resolved_action_env() (matflow.Action method) get_resources() (matflow.ElementActionRun method) get_schema_action() (matflow.Task method) get_script_path() (matflow.Action method) get_sequence_by_path() (matflow.ElementSet method) get_sequence_from_path() (matflow.ElementSet method) get_sequence_value() (matflow.Element method) get_shell_info() (in module matflow) get_size() (matflow.ElementParameter method) get_store_EARs() (matflow.Workflow method) get_store_element_iterations() (matflow.Workflow method) get_store_elements() (matflow.Workflow method) get_store_tasks() (matflow.Workflow method) get_sub_parameter_input_values() (matflow.Task method) get_task() (matflow.InputSource method) get_task_dependencies() (matflow.Element method) (matflow.ElementIteration method) (matflow.ElementSet method) (matflow.WorkflowTask method) get_task_elements() (matflow.Workflow method) get_task_IDs_from_element_IDs() (matflow.Workflow method) get_task_loop_idx_array() (matflow.Jobscript method) get_task_unique_names() (matflow.Task static method) (matflow.Workflow method) get_template_resources() (matflow.ElementActionRun method) get_unique_schedulers() (matflow.Submission method) get_unique_shells() (matflow.Submission method) group (matflow.SchemaInput attribute) group_by_distinct (matflow.ElementGroup attribute) GroupList (class in matflow)

H

helper_method() (matflow.param_classes.load.LoadCase static method)

I

id_ (matflow.Element property) (matflow.ElementActionRun property) (matflow.ElementIteration property) ignore_invalid_actions() (matflow.TaskSchema class method) IMPLICIT (matflow.ParameterPropagationMode attribute) IMPORT (matflow.InputSourceType attribute) import_() (matflow.InputSource class method) INDEX matflow-config-pop command line option matflow-workflow-WORKFLOW_PATH-get-param command line option matflow-workflow-WORKFLOW_PATH-get-param-source command line option matflow-workflow-WORKFLOW_PATH-is-param-set command line option index (matflow.Element property) (matflow.ElementActionRun property) (matflow.ElementIteration property) (matflow.ElementSet property) (matflow.Jobscript property) (matflow.Submission property) (matflow.Task property) (matflow.WorkflowLoop property) (matflow.WorkflowTask property) init_loop_index() (matflow.Element method) initialise_EARs() (matflow.WorkflowTask method) INPUT (matflow.TaskSourceType attribute) input_file (matflow.InputFileGenerator attribute) INPUT_FILE_GENERATOR (matflow.ActionScopeType attribute) input_file_generator() (matflow.ActionScope class method) input_files (matflow.Element property) (matflow.ElementAction property) (matflow.ElementActionRun property) (matflow.ElementIteration property) input_files_path (matflow.Workflow property) input_or_output (matflow.SchemaInput property) (matflow.SchemaOutput property) input_path (matflow.ValueSequence property) input_source_idx (matflow.Element property)

input_sources (matflow.Element property) input_type (matflow.ValueSequence property) input_types (matflow.ElementSet property) (matflow.TaskSchema property) InputFile (class in matflow) InputFileGenerator (class in matflow) InputFileGeneratorSource (class in matflow) inputs (matflow.Element property) (matflow.ElementAction property) (matflow.ElementActionRun property) (matflow.ElementIteration property) (matflow.InputFileGenerator attribute) (matflow.OutputFileParser attribute) (matflow.WorkflowTask property) InputSource (class in matflow) InputSourceType (class in matflow) InputValue (class in matflow) insert_ID (matflow.Task property) (matflow.WorkflowTask property) is_array (matflow.Jobscript property) is_file (matflow.Parameter attribute) is_in() (matflow.InputSource method) is_input_type_provided() (matflow.ElementSet method) is_input_type_required() (matflow.Action method) (matflow.Task method) is_parameter_set() (matflow.Workflow method) is_pending (matflow.Element property) (matflow.ElementActionRun property) (matflow.ElementIteration property) is_set (matflow.ElementParameter property) is_sub_value (matflow.InputValue property) (matflow.ValueSequence property) islice() (matflow.Elements method) (matflow.Parameters method) iterable_parameters (matflow.WorkflowLoop property) iteration_IDs (matflow.Element property) iterations (matflow.Element property)

J

Jobscript (class in matflow) JOBSCRIPT_IDX matflow-internal-workflow-PATH-write-commands command line option jobscript_indices (matflow.Submission property) jobscript_name (matflow.Jobscript property) jobscript_path (matflow.Jobscript property)

jobscripts (matflow.Submission property) JS_ACTION_IDX matflow-internal-workflow-PATH-write-commands command line option JS_IDX matflow-workflow-WORKFLOW_PATH-sub-SUB_IDX-js command line option JS_parallelism (matflow.Submission property)

L

label (matflow.FileSpec attribute) latest_iteration (matflow.Element property) list_attrs() (matflow.CommandFilesList method) (matflow.EnvironmentsList method) (matflow.ExecutablesList method) (matflow.GroupList method) (matflow.ParametersList method) (matflow.ResourceList method) (matflow.TaskList method) (matflow.TaskSchemasList method) (matflow.TaskTemplateList method) (matflow.WorkflowLoopList method) (matflow.WorkflowTaskList method)

LoadCase (class in matflow.param_classes.load) LOCAL (matflow.InputSourceType attribute) local() (matflow.InputSource class method) Loop (class in matflow) loop_idx (matflow.ElementIteration property) loops (matflow.Workflow property) (matflow.WorkflowTemplate attribute)

M

MAIN (matflow.ActionScopeType attribute) main() (matflow.ActionScope class method) make_and_submit_workflow() (in module matflow) make_artifact_dirs() (matflow.Jobscript method) make_persistent() (matflow.InputFile method) (matflow.InputFileGeneratorSource method) (matflow.InputValue method) (matflow.OutputFileParserSource method) (matflow.ResourceSpec method) (matflow.TaskSchema method) (matflow.ValuePerturbation method) (matflow.ValueSequence method) make_workflow() (in module matflow) matflow module matflow command line option --config-dir --config-invocation-key --help --hpcflow-version --run-time-info --version --with-config matflow-config command line option --invocation matflow-config-append command line option NAME VALUE matflow-config-get command line option --all --file NAME matflow-config-pop command line option INDEX NAME matflow-config-prepend command line option NAME VALUE matflow-config-set command line option --json NAME VALUE matflow-config-unset command line option NAME matflow-demo-software-doSomething command line option --infile1 --infile2 --out --value -i1 -i2 -o -v matflow-go command line option --format --js-parallelism --name --overwrite --path --store --string --ts-fmt --ts-name-fmt TEMPLATE_FILE_OR_STR matflow-helper-pid command line option --file -f matflow-helper-restart command line option --timeout --timeout-check-interval --watch-interval matflow-helper-run command line option --timeout --timeout-check-interval --watch-interval matflow-helper-start command line option --timeout --timeout-check-interval --watch-interval

matflow-internal-workflow command line option PATH matflow-internal-workflow-PATH-get-ear-skipped command line option EAR_ID matflow-internal-workflow-PATH-save-parameter command line option EAR_ID NAME VALUE matflow-internal-workflow-PATH-set-ear-end command line option EAR_ID EXIT_CODE matflow-internal-workflow-PATH-set-ear-skip command line option EAR_ID matflow-internal-workflow-PATH-set-ear-start command line option EAR_ID matflow-internal-workflow-PATH-write-commands command line option EAR_ID JOBSCRIPT_IDX JS_ACTION_IDX SUBMISSION_IDX matflow-make command line option --format --name --overwrite --path --store --string --ts-fmt --ts-name-fmt TEMPLATE_FILE_OR_STR matflow-submission command line option --os-info matflow-submission-shell-info command line option --exclude-os SHELL_NAME matflow-test command line option PY_TEST_ARGS matflow-test-hpcflow command line option PY_TEST_ARGS matflow-workflow command line option WORKFLOW_PATH matflow-workflow-WORKFLOW_PATH-get-param command line option INDEX matflow-workflow-WORKFLOW_PATH-get-param-source command line option INDEX matflow-workflow-WORKFLOW_PATH-is-param-set command line option INDEX matflow-workflow-WORKFLOW_PATH-sub command line option SUB_IDX matflow-workflow-WORKFLOW_PATH-sub-SUB_IDX-js command line option JS_IDX matflow-workflow-WORKFLOW_PATH-submit command line option --js-parallelism matflow.cli module matflow.param_classes module matflow.param_classes.load module matflow.param_classes.orientations module matflow.tests module matflow.tests.test_cli module metadata (matflow.ElementActionRun property) module matflow matflow.cli matflow.param_classes matflow.param_classes.load matflow.param_classes.orientations matflow.tests matflow.tests.test_cli multiplicative_factor (matflow.ValuePerturbation attribute)

N

NAME matflow-config-append command line option matflow-config-get command line option matflow-config-pop command line option matflow-config-prepend command line option matflow-config-set command line option matflow-config-unset command line option matflow-internal-workflow-PATH-save-parameter command line option name (matflow.ElementGroup attribute) (matflow.FileSpec attribute) (matflow.Loop property) (matflow.SchemaInput property) (matflow.SchemaOutput property) (matflow.SchemaParameter property) (matflow.Task property) (matflow.TaskObjective attribute) (matflow.TaskSchema property) (matflow.ValuePerturbation attribute) (matflow.Workflow property) (matflow.WorkflowLoop property) (matflow.WorkflowTask property) (matflow.WorkflowTemplate attribute) needs_submit (matflow.Submission property) nesting_order (matflow.ElementPropagation attribute) NEVER (matflow.ParameterPropagationMode attribute) new_empty_loop() (matflow.WorkflowLoop class method) new_empty_task() (matflow.WorkflowTask class method) non_iterable_parameters (matflow.Loop property) non_universal_input_types (matflow.Task property) normalised_files_path (matflow.InputFile property)

normalised_inputs_path (matflow.InputValue property) (matflow.ValueSequence property) normalised_path (matflow.InputFile property) (matflow.InputValue property) (matflow.ResourceSpec property) (matflow.ValueSequence property) normalised_resources_path (matflow.ResourceSpec property) num_actions (matflow.Jobscript property) (matflow.WorkflowTask property) num_added_iterations (matflow.WorkflowLoop property) num_added_tasks (matflow.Workflow property) num_all_schema_actions (matflow.Task property) num_cores (matflow.ElementResources attribute) (matflow.ExecutableInstance attribute) (matflow.ResourceSpec property) num_EARs (matflow.Workflow property) num_element_iterations (matflow.Workflow property) num_element_sets (matflow.Task property) (matflow.WorkflowTask property) num_elements (matflow.Jobscript property) (matflow.Workflow property) (matflow.WorkflowTask property) num_iterations (matflow.Loop property) (matflow.WorkflowLoop property) num_loops (matflow.Workflow property) num_runs (matflow.ElementAction property) num_submissions (matflow.Workflow property) num_tasks (matflow.Workflow property) number (matflow.ElementRepeats attribute) NumCores (class in matflow)

O

objective (matflow.Task property) options (matflow.OutputFileParser attribute) ori_format (matflow.param_classes.orientations.Orientations attribute) OrientationFormat (class in matflow.param_classes.orientations) Orientations (class in matflow.param_classes.orientations) os_name (matflow.ElementResources attribute) (matflow.Jobscript property) (matflow.ResourceSpec property) output (matflow.OutputFileParser attribute) OUTPUT (matflow.TaskSourceType attribute) OUTPUT_FILE_PARSER (matflow.ActionScopeType attribute) output_file_parser() (matflow.ActionScope class method) output_files (matflow.Element property) (matflow.ElementAction property) (matflow.ElementActionRun property) (matflow.ElementIteration property) (matflow.OutputFileParser attribute)

output_types (matflow.TaskSchema property) OutputFileParser (class in matflow) OutputFileParserSource (class in matflow) outputs (matflow.Element property) (matflow.ElementAction property) (matflow.ElementActionRun property) (matflow.ElementIteration property) (matflow.WorkflowTask property) outstanding_jobscripts (matflow.Submission property)

P

parallel_mode (matflow.ExecutableInstance attribute) Parameter (class in matflow) parameter (matflow.SchemaInput attribute) (matflow.SchemaOutput attribute) (matflow.SubParameter attribute) (matflow.ValueSequence property) parameter_path (matflow.ElementFilter attribute) ParameterPath (class in matflow) ParameterPropagationMode (class in matflow) Parameters (class in matflow) ParametersList (class in matflow) ParameterValue (class in matflow) parent (matflow.ElementParameter attribute) PATH matflow-internal-workflow command line option path (matflow.ElementParameter attribute) (matflow.InputFile property) (matflow.InputFileGeneratorSource property) (matflow.OutputFileParserSource property) (matflow.ParameterPath attribute) (matflow.Parameters attribute) (matflow.Submission property) (matflow.ValuePerturbation attribute)

path_split (matflow.ValueSequence property) path_type (matflow.ValueSequence property) prepare_element_resolution() (matflow.Task method) prepare_persistent_copy() (matflow.ElementSet method) PROCESSING (matflow.ActionScopeType attribute) processing() (matflow.ActionScope class method) propagation_mode (matflow.SchemaInput attribute) (matflow.SchemaOutput attribute) provides_parameters (matflow.Task property) (matflow.TaskSchema property) PY_TEST_ARGS matflow-test command line option matflow-test-hpcflow command line option

Q

quat_sample_random() (matflow.param_classes.orientations.Orientations static method)

QUATERNION (matflow.param_classes.orientations.OrientationFormat attribute)

R

raise_on_missing (matflow.Parameters attribute) read_contents() (matflow.InputFile method) (matflow.InputFileGeneratorSource method) (matflow.OutputFileParserSource method) resolve_element_data_indices() (matflow.WorkflowTask static method) resolve_jobscripts() (matflow.Workflow method) resource_scope (matflow.ValueSequence property) ResourceList (class in matflow)

resources (matflow.ElementActionRun property) (matflow.Jobscript property) (matflow.WorkflowTemplate attribute) ResourceSpec (class in matflow) return_element_parameters (matflow.Parameters attribute) rule (matflow.ActionRule attribute) run_hpcflow_tests() (in module matflow) run_tests() (in module matflow) runs (matflow.ElementAction property)

S

save_files (matflow.OutputFileParser attribute) save_parameter() (matflow.Workflow method) scheduler (matflow.ElementResources attribute) (matflow.Jobscript property) (matflow.ResourceSpec property) scheduler_args (matflow.ElementResources attribute) (matflow.ResourceSpec property) scheduler_job_ID (matflow.Jobscript property) scheduler_name (matflow.Jobscript property) scheduler_options (matflow.ElementResources attribute) (matflow.ResourceSpec property) schema_parameters (matflow.Element property) (matflow.ElementIteration property) SchemaInput (class in matflow) SchemaOutput (class in matflow) SchemaParameter (class in matflow) schemas (matflow.Task property) scope (matflow.ActionEnvironment attribute) scratch (matflow.ElementResources attribute) (matflow.ResourceSpec property) script (matflow.InputFileGenerator attribute) (matflow.OutputFileParser attribute) sequence_idx (matflow.Element property) set_EAR_end() (matflow.Workflow method) set_EAR_skip() (matflow.Workflow method) set_EAR_start() (matflow.Workflow method) set_EAR_submission_index() (matflow.Workflow method) set_parameter_value() (matflow.Workflow method) set_sequence_parameters() (matflow.Task method) shell (matflow.ElementResources attribute) (matflow.Jobscript property) (matflow.ResourceSpec property) shell_args (matflow.ElementResources attribute) (matflow.ResourceSpec property) SHELL_NAME matflow-submission-shell-info command line option shell_name (matflow.Jobscript property)

show_all_EAR_statuses() (matflow.Workflow method) skip (matflow.ElementActionRun property) snapshot_end (matflow.ElementActionRun property) snapshot_start (matflow.ElementActionRun property) start (matflow.NumCores attribute) start_time (matflow.ElementActionRun property) status (matflow.Submission property) stderr (matflow.Command attribute) stdin (matflow.Command attribute) stdout (matflow.Command attribute) stem (matflow.FileNameSpec property) (matflow.FileSpec property) step (matflow.NumCores attribute) stop (matflow.NumCores attribute) store_contents (matflow.InputFile property) (matflow.InputFileGeneratorSource property) (matflow.OutputFileParserSource property) store_format (matflow.Workflow property) SUB_IDX matflow-workflow-WORKFLOW_PATH-sub command line option sub_parameters (matflow.Parameter attribute) Submission (class in matflow) submission (matflow.Jobscript property) submission_attempts (matflow.Submission property) SUBMISSION_IDX matflow-internal-workflow-PATH-write-commands command line option submission_idx (matflow.ElementActionRun property) submission_status (matflow.ElementActionRun property) submissions (matflow.Workflow property) submissions_path (matflow.Workflow property) submit() (matflow.Jobscript method) (matflow.Submission method) (matflow.Workflow method) submit_time (matflow.Jobscript property) submit_workflow() (in module matflow) submitted_jobscripts (matflow.Submission property) SubParameter (class in matflow) success (matflow.ElementActionRun property)

T

Task (class in matflow) task (matflow.Element property) (matflow.ElementAction property) (matflow.ElementActionRun property) (matflow.ElementIteration property) (matflow.ElementParameter attribute) (matflow.ElementPropagation attribute) (matflow.Elements property) (matflow.ElementSet property) TASK (matflow.InputSourceType attribute) task (matflow.ParameterPath attribute) (matflow.Parameters attribute) (matflow.TaskInputParameters attribute) (matflow.TaskOutputParameters attribute) task() (matflow.InputSource class method) task_actions (matflow.Jobscript property) task_artifacts_path (matflow.Workflow property) task_elements (matflow.Jobscript property) task_indices (matflow.WorkflowLoop property) task_insert_IDs (matflow.Jobscript property) (matflow.Loop property) (matflow.WorkflowLoop property) task_loop_idx (matflow.Jobscript property) task_objects (matflow.Loop property) (matflow.WorkflowLoop property) task_schema (matflow.Action property) (matflow.SchemaInput property) task_template (matflow.ElementSet property) (matflow.TaskSchema property) TaskInputParameters (class in matflow) TaskList (class in matflow) TaskObjective (class in matflow) TaskOutputParameters (class in matflow) tasks (matflow.Workflow property) (matflow.WorkflowTemplate attribute) TaskSchema (class in matflow) TaskSchemasList (class in matflow) TaskSourceType (class in matflow) TaskTemplateList (class in matflow) template (matflow.Workflow property) (matflow.WorkflowLoop property) (matflow.WorkflowTask property) template_components (matflow.Workflow property) TEMPLATE_FILE_OR_STR matflow-go command line option matflow-make command line option temporary_rename() (matflow.Workflow class method) test_action_rule() (matflow.WorkflowTask method) test_hpcflow_version() (in module matflow.tests.test_cli) test_version() (in module matflow.tests.test_cli) time_limit (matflow.ElementResources attribute) (matflow.ResourceSpec property) to_dict() (matflow.Action method) (matflow.ActionEnvironment method) (matflow.ActionRule method) (matflow.ActionScope method) (matflow.Command method) (matflow.CommandFilesList method) (matflow.ElementResources method) (matflow.ElementSet method) (matflow.Environment method) (matflow.EnvironmentsList method) (matflow.Executable method) (matflow.ExecutableInstance method) (matflow.ExecutablesList method) (matflow.FileNameExt method) (matflow.FileNameSpec method) (matflow.FileNameStem method) (matflow.FileSpec method) (matflow.GroupList method) (matflow.InputFile method) (matflow.InputFileGenerator method) (matflow.InputFileGeneratorSource method) (matflow.InputSource method) (matflow.InputValue method) (matflow.Jobscript method) (matflow.Loop method) (matflow.NumCores method) (matflow.OutputFileParser method) (matflow.OutputFileParserSource method) (matflow.param_classes.load.LoadCase method) (matflow.param_classes.orientations.Orientations method) (matflow.Parameter method) (matflow.ParameterPath method) (matflow.ParametersList method) (matflow.ParameterValue method) (matflow.ResourceList method) (matflow.ResourceSpec method) (matflow.SchemaInput method) (matflow.SchemaOutput method) (matflow.SchemaParameter method) (matflow.Submission method) (matflow.Task method) (matflow.TaskList method) (matflow.TaskObjective method) (matflow.TaskSchema method) (matflow.TaskSchemasList method) (matflow.TaskTemplateList method) (matflow.ValuePerturbation method) (matflow.ValueSequence method) (matflow.WorkflowLoopList method) (matflow.WorkflowTaskList method) (matflow.WorkflowTemplate method)

to_element_set_data() (matflow.Element method) to_json_like() (matflow.Action method) (matflow.ActionEnvironment method) (matflow.ActionRule method) (matflow.ActionScope method) (matflow.Command method) (matflow.CommandFilesList method) (matflow.ElementResources method) (matflow.ElementSet method) (matflow.Environment method) (matflow.EnvironmentsList method) (matflow.Executable method) (matflow.ExecutableInstance method) (matflow.ExecutablesList method) (matflow.FileNameExt method) (matflow.FileNameSpec method) (matflow.FileNameStem method) (matflow.FileSpec method) (matflow.GroupList method) (matflow.InputFile method) (matflow.InputFileGenerator method) (matflow.InputFileGeneratorSource method) (matflow.InputSource method) (matflow.InputValue method) (matflow.Jobscript method) (matflow.Loop method) (matflow.NumCores method) (matflow.OutputFileParser method) (matflow.OutputFileParserSource method) (matflow.Parameter method) (matflow.ParameterPath method) (matflow.ParametersList method) (matflow.ResourceList method) (matflow.ResourceSpec method) (matflow.SchemaInput method) (matflow.SchemaOutput method) (matflow.SchemaParameter method) (matflow.Submission method) (matflow.Task method) (matflow.TaskList method) (matflow.TaskObjective method) (matflow.TaskSchema method) (matflow.TaskSchemasList method) (matflow.TaskTemplateList method) (matflow.ValuePerturbation method) (matflow.ValueSequence method) (matflow.WorkflowLoopList method) (matflow.WorkflowTaskList method) (matflow.WorkflowTemplate method) to_persistent() (matflow.Task method) to_string() (matflow.ActionScope method) (matflow.InputSource method) to_zip() (matflow.Workflow method) typ (matflow.Parameter attribute) (matflow.SchemaInput property) (matflow.SchemaOutput property) (matflow.SchemaParameter property)

U

undefined_input_types (matflow.ElementSet property) (matflow.Task property) undefined_inputs (matflow.Task property) uniaxial() (matflow.param_classes.load.LoadCase class method) unique_name (matflow.WorkflowTask property)

universal_input_types (matflow.Task property) unsourced_inputs (matflow.Task property) upstream_tasks (matflow.WorkflowTask property) use_job_array (matflow.ElementResources attribute) (matflow.ResourceSpec property)

V

VALUE matflow-config-append command line option matflow-config-prepend command line option matflow-config-set command line option matflow-internal-workflow-PATH-save-parameter command line option value (matflow.ElementParameter property) (matflow.InputValue property) (matflow.ValuePerturbation property)

value() (matflow.FileNameExt method) (matflow.FileNameSpec method) (matflow.FileNameStem method) (matflow.FileSpec method) ValuePerturbation (class in matflow) values (matflow.ValueSequence property) ValueSequence (class in matflow) version_info (matflow.Jobscript property)

W

where (matflow.ElementGroup attribute) (matflow.ElementRepeats attribute) (matflow.SchemaInput attribute) Workflow (class in matflow) workflow (matflow.Element property) (matflow.ElementActionRun property) (matflow.ElementIteration property) (matflow.InputFile property) (matflow.InputFileGeneratorSource property) (matflow.InputValue property) (matflow.Jobscript property) (matflow.OutputFileParserSource property) (matflow.ResourceSpec property) (matflow.Submission property) (matflow.ValuePerturbation property) (matflow.ValueSequence property) (matflow.WorkflowLoop property) (matflow.WorkflowTask property) (matflow.WorkflowTemplate attribute)

workflow_app_alias (matflow.Jobscript property) WORKFLOW_PATH matflow-workflow command line option workflow_template (matflow.Loop property) (matflow.ResourceList property) (matflow.ResourceSpec property) (matflow.WorkflowBlueprint attribute) WorkflowBlueprint (class in matflow) WorkflowLoop (class in matflow) WorkflowLoopList (class in matflow) WorkflowTask (class in matflow) WorkflowTaskList (class in matflow) WorkflowTemplate (class in matflow) write_commands() (matflow.Workflow method) write_EAR_ID_file() (matflow.Jobscript method) write_element_run_dir_file() (matflow.Jobscript method) write_jobscript() (matflow.Jobscript method) write_source() (matflow.ElementActionRun method) (matflow.InputFileGenerator method) (matflow.OutputFileParser method)